moments

Getting started

  • Introduction
  • Installation

SFS

  • The Site Frequency Spectrum
  • SFS Inference

Linkage disequilibrium

  • Multi-population LD statistics
  • Parsing LD statistics
  • Inferring demography with LD

Extensions

  • Specifying models with demes
  • Two-locus frequency spectrum
  • Triallele frequency spectrum

Modules

  • Demography and genetic diversity
  • DFE inference
  • Linkage disequilibrium and recombination
  • Selection at two loci

Data types and functions

  • API for site frequency spectra
  • API for linkage disequilibrium
  • API for demes functions
moments
  • Overview: module code

All modules for which code is available

  • moments.Demes.Demes
  • moments.Demes.DemesUtil
  • moments.Demes.Inference
  • moments.Demographics1D
  • moments.Demographics2D
  • moments.Demographics3D
  • moments.Godambe
  • moments.Inference
  • moments.LD.Demographics1D
  • moments.LD.Demographics2D
  • moments.LD.Demographics3D
  • moments.LD.Godambe
  • moments.LD.Inference
  • moments.LD.LDstats_mod
  • moments.LD.Parsing
  • moments.LD.Util
  • moments.Misc
  • moments.Plotting
  • moments.Spectrum_mod
  • moments.Triallele.TriSpectrum_mod
  • moments.TwoLocus.Demographics
  • moments.TwoLocus.TLSpectrum_mod

© Copyright 2020, Aaron Ragsdale.

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