moments

Getting started

  • Introduction
  • Installation

SFS

  • The Site Frequency Spectrum
  • Parsing the SFS from a VCF file
  • SFS Inference

Linkage disequilibrium

  • Multi-population LD statistics
  • Parsing LD statistics
  • Inferring demography with LD

Extensions

  • Specifying models with demes
  • Two-locus frequency spectrum
  • Triallele frequency spectrum

Modules

  • Demography and genetic diversity
  • DFE inference
  • Linkage disequilibrium and recombination
  • Selection at two loci

Data types and functions

  • API for site frequency spectra
  • API for linkage disequilibrium
  • API for demes functions
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© Copyright 2020, Aaron Ragsdale.

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